Information
With the release of macOS 10.12 Apple has included a developer preview of a new file system called APFS. Many features desired in a modern file system are ready for use and some will be available when the release version is available in 2017. At this time the file system cannot be used for boot volumes or with FileVault. Filesystem formatting and manipulation is only available in the command line and not the GUI and there are some reported gaps with the encryption capabilities. Until the filesystem supports boot volumes, FileVault, OS integrated encryption and key management as well as GUI management it should not be used with production systems.
APFS is part of macOS 10.13 and is expected to be used there. It is still recommended not to use on 10.12 systems.
For more information on APFS
https://developer.apple.com/library/prerelease/content/documentation/FileManagement/Conceptual/APFS_Guide/Introduction/Introduction.html#//apple_ref/doc/uid/TP40016999-CH1-DontLinkElementID_18
http://arstechnica.com/apple/2016/09/macos-10-12-sierra-the-ars-technica-review/8/
Rationale:
APFS in macOS 10.12 has limitations that were resolved in macOS 10.13. The unfinished feature set argue agains the use of APFS in production systems that are not running 10.13 or higher.
NOTE: Nessus has provided the target output to assist in reviewing the benchmark to ensure target compliance.
Solution
Ensure that if found the use of a the filesystem is not in contradiction of organizational policies. If required ensure information is backed up and reformat the drive to Journaled HFS+.